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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33828317_33829411_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33828317 - 33829411
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCCC
5'SS Class:
major
3'SS Sequence:
ATTCTTTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATTACTTTTATT
Flanking Amino Acid:
VLTEDKPIKPVIVESDFAKY
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
63.8
40.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
80
0.67
0.8
73.5
36.3
Minor 5ss
31.4
-2.1
3.3
42.6
44.4
Minor BPS
61.9
0.46
1.6
78.73
37.4

Associated Gene:

Gene:
GSDME
Ensembl Gene ID:
ENSAPLG00000014944
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015582
33799755 - 33832712
32958