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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33829643_33831409_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
33829643 - 33831409
Intron Length:
1767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TAGTTCTGAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
89.9
0.9
0.7
85.1
29.6
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
58.6
0.27
1.5
66.64
39.2

Associated Gene:

Gene:
GSDME
Ensembl Gene ID:
ENSAPLG00000014944
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015582
33799755 - 33832712
32958