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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33852206_33852848_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33852206 - 33852848
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGTGAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTATGTATTT
Flanking Amino Acid:
TSSSNCIWRANPMPKDYEQW
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
70.7
33.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
91.9
0.94
0.5
89.3
19.5
Minor 5ss
31.1
-2.2
3
36.7
34
Minor BPS
47.7
-0
2.3
76.23
41.2

Associated Gene:

Gene:
OSBPL3
Ensembl Gene ID:
ENSAPLG00000015336
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041547
33850105 - 33915891
65787
ENSAPLT00000016000
33850105 - 33915891
65787