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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33854449_33855070_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33854449 - 33855070
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TATTTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
ATTTTCTTACAG
Flanking Amino Acid:
PVGTTHVTLPAFKDHFAWNK
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.3
69.7
41.3
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
89.8
0.9
0.7
84.5
30.1
Minor 5ss
36.3
-1.6
3.2
46.2
42.2
Minor BPS
58.7
0.13
1.8
66.56
41.1

Associated Gene:

Gene:
OSBPL3
Ensembl Gene ID:
ENSAPLG00000015336
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016000
33850105 - 33915891
65787
ENSAPLT00000041547
33850105 - 33915891
65787