About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33855150_33858156_R


Intron Information:

Intron Rank:
18

Intron Class:
major-like

Intron Phase:
1

Intron Coordinates:
33855150 - 33858156

Intron Length:
3007

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAACCTTT

5'SS Class:
weak_major

3'SS Sequence:
CCTCCTGTTTCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GACTAAA

U12 Branch Point Sequence:
TTTTTTTTTCCT

Flanking Amino Acid:
AESVNFAFWQDVRWKNKFWG

Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.8
0.68
1.1
78.8
38.3

Major BPS
59.8
0.24
1.2
61.9
33.9

Major PPT
78.8
0.65
0.8
75.7
32.7

Minor 5ss
68.6
0.63
2.3
82.3
37.5

Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
OSBPL3

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

33850105 - 33915891
65787

33850105 - 33915891
65787