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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33862962_33865643_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33862962 - 33865643
Intron Length:
2682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATTGATTAACT
Flanking Amino Acid:
NDMENERQTLDCISESGIGC
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
84.1
0.77
0.8
81.1
30.1
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
65.8
0.57
2
86.69
38.7

Associated Gene:

Gene:
OSBPL3
Ensembl Gene ID:
ENSAPLG00000015336
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041547
33850105 - 33915891
65787
ENSAPLT00000016000
33850105 - 33915891
65787