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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33866554_33869347_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33866554 - 33869347
Intron Length:
2794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTCTTTTAAAC
Flanking Amino Acid:
NAKSSPDLVKENSREESRGL
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
79.5
0.66
0.9
77.4
34.7
Minor 5ss
32.5
-2
3.1
41.1
45.5
Minor BPS
68.8
0.57
1.3
76.65
32.7

Associated Gene:

Gene:
OSBPL3
Ensembl Gene ID:
ENSAPLG00000015336
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016000
33850105 - 33915891
65787