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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33874405_33876758_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
33874405 - 33876758
Intron Length:
2354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACGAA
5'SS Class:
strong_major
3'SS Sequence:
AAAATGATTCTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
QEDLFHIAHKVYFTLKSAFS
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
70.9
35
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
56.3
0.14
1.1
45
45.6
Minor 5ss
35
-1.7
3.4
46.2
49.1
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
OSBPL3
Ensembl Gene ID:
ENSAPLG00000015336
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041547
33850105 - 33915891
65787
ENSAPLT00000016000
33850105 - 33915891
65787