About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33876916_33877546_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33876916 - 33877546
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTCCTCCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAA
U12 Branch Point Sequence:
TCCTCCTTACAG
Flanking Amino Acid:
VGKEAKGTLQVPSVFSAPMR
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
59.7
0.24
1
67
29.8
Major PPT
79.3
0.66
0.8
72.2
32.5
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
55.8
0.04
1.9
60.06
47.5

Associated Gene:

Gene:
OSBPL3
Ensembl Gene ID:
ENSAPLG00000015336
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016000
33850105 - 33915891
65787
ENSAPLT00000041547
33850105 - 33915891
65787