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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33883709_33883912_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33883709 - 33883912
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TTCTCTTTACTT
Flanking Amino Acid:
ILKYSKCQADIERGKLHGCI
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
89.1
24.2
Major BPS
74
0.6
1
65.6
41.1
Major PPT
88.6
0.87
0.7
84.2
30.3
Minor 5ss
39.8
-1.1
2.9
56
41.5
Minor BPS
69
0.67
1.6
82.98
39.3

Associated Gene:

Gene:
OSBPL3
Ensembl Gene ID:
ENSAPLG00000015336
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041547
33850105 - 33915891
65787
ENSAPLT00000016000
33850105 - 33915891
65787