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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33884316_33892153_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33884316 - 33892153
Intron Length:
7838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACAA
5'SS Class:
major
3'SS Sequence:
TCTATTTAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTCTATTTAAGC
Flanking Amino Acid:
SCSSKQGSRQDSWEIVEGLR
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
36.3
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
73.4
0.53
1
70.6
38.9
Minor 5ss
31.3
-2.1
3
39.2
46
Minor BPS
59.5
0.28
1.8
70.69
41

Associated Gene:

Gene:
OSBPL3
Ensembl Gene ID:
ENSAPLG00000015336
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016000
33850105 - 33915891
65787
ENSAPLT00000041547
33850105 - 33915891
65787