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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33978571_33980736_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33978571 - 33980736
Intron Length:
2166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
CTTCCTCCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CCTTCCTCCATT
Flanking Amino Acid:
TGELGTDVELKETFLSSLSQ
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
71.6
0.49
0.8
71.2
28.4
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
52.7
0.16
2
71.5
46

Associated Gene:

Gene:
C7orf31
Ensembl Gene ID:
ENSAPLG00000012025
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012515
33977838 - 34001971
24134