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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33981241_33981995_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33981241 - 33981995
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTAAT
5'SS Class:
major
3'SS Sequence:
TCTTATCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATGCCTTACCT
Flanking Amino Acid:
HWPGQYTYFQLPKFAEEKGQ
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80.7
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.3
0.77
0.8
81.6
30.1
Minor 5ss
37.7
-1.4
3.1
50.6
40.3
Minor BPS
69.6
0.69
1.7
85.03
41.4

Associated Gene:

Gene:
C7orf31
Ensembl Gene ID:
ENSAPLG00000012025
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012515
33977838 - 34001971
24134