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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33986105_33991227_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33986105 - 33991227
Intron Length:
5123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTCCCTAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTTCCCTAATA
Flanking Amino Acid:
KKSDVRMNDDLLHKPPSSLA
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
77.4
33.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
75.1
0.57
0.9
69.5
34.5
Minor 5ss
46.7
-0.3
2.8
68.1
42.7
Minor BPS
71.4
0.67
1.6
79.96
36.4

Associated Gene:

Gene:
C7orf31
Ensembl Gene ID:
ENSAPLG00000012025
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012515
33977838 - 34001971
24134