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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33991300_33993180_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33991300 - 33993180
Intron Length:
1881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTTCTACATTT
Flanking Amino Acid:
HFGSAVDPCPRGLPIEQYYD
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
78.9
0.65
0.9
75.1
33.3
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
46.7
-0.1
2
69.89
41.3

Associated Gene:

Gene:
C7orf31
Ensembl Gene ID:
ENSAPLG00000012025
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012515
33977838 - 34001971
24134