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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33993358_33997763_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33993358 - 33997763
Intron Length:
4406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTTTGGGGAATT
Flanking Amino Acid:
IPSRLTVSQDRYKKFRESLH
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.1
36.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
33.8
-1.8
2.9
41.1
44.9
Minor BPS
41.4
-0.5
2.8
72.16
45.3

Associated Gene:

Gene:
C7orf31
Ensembl Gene ID:
ENSAPLG00000012025
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012515
33977838 - 34001971
24134