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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33997912_34001832_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
33997912 - 34001832
Intron Length:
3921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTCA
5'SS Class:
major
3'SS Sequence:
TACTTTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATCCCTCTACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.6
39.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.5
0.6
0.8
69.7
36.4
Minor 5ss
42.7
-0.8
3.1
56.5
47.9
Minor BPS
59.1
0.37
1.9
79.61
41.6

Associated Gene:

Gene:
C7orf31
Ensembl Gene ID:
ENSAPLG00000012025
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012515
33977838 - 34001971
24134