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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34013511_34014404_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34013511 - 34014404
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAATA
5'SS Class:
strong_major
3'SS Sequence:
CTGATATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATAT
Flanking Amino Acid:
LSQGVQESEPGI*
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.1
80.8
33.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
73
0.52
0.9
70.2
40.3
Minor 5ss
42.6
-0.8
3
57.9
46.3
Minor BPS
58.6
0.35
1.8
81.96
39.1

Associated Gene:

Gene:
NPVF
Ensembl Gene ID:
ENSAPLG00000011937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012421
34013133 - 34016666
3534