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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3402286_3411826_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3402286 - 3411826
Intron Length:
9541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCACTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATCAC
U12 Branch Point Sequence:
TTTGTCTCACTG
Flanking Amino Acid:
RSLCWLLLPLVAGIHPECKI
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
70.5
0.51
1
72
33.1
Major PPT
53.3
0.08
1.7
66.4
39.8
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
47.7
-0.3
1.9
58.48
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010054
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010537
3401406 - 3431767
30362