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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34067800_34097903_F

Intron Information:

Intron Rank:
125661
Intron Class:
major
Intron Phase:
Intron Coordinates:
34067800 - 34097903
Intron Length:
30104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGCGGATT
5'SS Class:
major
3'SS Sequence:
CCATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTGCACACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.2
0.24
1.1
63.8
42
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
85.6
0.8
0.8
83.8
30.9
Minor 5ss
33.9
-1.8
3.6
53.4
44.7
Minor BPS
44.2
-0.3
2
65.79
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017675
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037988
34067578 - 34098595
31018