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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34075018_34097903_F

Intron Information:

Intron Rank:
125663
Intron Class:
major
Intron Phase:
Intron Coordinates:
34075018 - 34097903
Intron Length:
22886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTGCACACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
85.6
0.8
0.8
83.8
30.9
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
44.2
-0.3
2
65.79
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017675
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039521
34074608 - 34098595
23988