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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3417577_3420343_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3417577 - 3420343
Intron Length:
2767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCATAA
U12 Branch Point Sequence:
TTTTTCTCATAG
Flanking Amino Acid:
EGSSKGPEDQKSYYSAFWRV
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
49.9
-0
1.1
47
38.6
Major PPT
83.9
0.76
0.7
80.2
25.4
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
50.1
-0.1
2
64.63
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010054
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010537
3401406 - 3431767
30362