About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3420442_3421550_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3420442 - 3421550
Intron Length:
1109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTTTTTCTATGT
Flanking Amino Acid:
ITALIVFAAFRKFHCTRNYI
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
81.3
0.7
0.9
81.9
34.4
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
45.3
-0.2
2.1
67.24
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010054
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010537
3401406 - 3431767
30362