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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34210817_34214246_R

Intron Information:

Intron Rank:
129420
Intron Class:
major
Intron Phase:
Intron Coordinates:
34210817 - 34214246
Intron Length:
3430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACAAAG
5'SS Class:
major
3'SS Sequence:
TCCATTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CCATTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
67.7
39.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
72.9
0.52
1
73.6
34.7
Minor 5ss
32.9
-1.9
2.9
39.4
46.1
Minor BPS
53.6
-0
1.5
52.29
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016837
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030828
34210583 - 34215896
5314