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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3424401_3427559_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3424401 - 3427559
Intron Length:
3159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
GTATAGATAATA
Flanking Amino Acid:
VLTRIHQQNTGCWDDDENGV
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
71.4
0.53
1
67
39.8
Major PPT
83.4
0.75
0.9
80.8
36.8
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
44.1
-0.4
2.3
59.22
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010054
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010537
3401406 - 3431767
30362