About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3427630_3428506_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3427630 - 3428506
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTATGATTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTTCTTTACA
Flanking Amino Acid:
IKGPILLTVLINFIIFINVI
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1
69.7
35.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
96.1
1.04
0.5
91.7
19.5
Minor 5ss
56.4
0.22
2.7
75.1
35.6
Minor BPS
77.1
0.85
1.5
87.01
30.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010054
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010537
3401406 - 3431767
30362