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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3428599_3429043_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3428599 - 3429043
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
ATTGGTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTTCTTTAATT
Flanking Amino Acid:
DGGGSHSSHFVRLAKSTLLL
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.2
0.66
0.9
69.7
45.4
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
84.7
1.17
0.9
92.55
29.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010054
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010537
3401406 - 3431767
30362