Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3429174_3430417_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3429174 - 3430417

Intron Length:

1244

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTGA

5'SS Class:

strong_major

3'SS Sequence:

CTCCCTGTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTGAT

U12 Branch Point Sequence:

CCTTCTCTATTC

Flanking Amino Acid:

YIELGLGSFQGFVVALLYCF

Intron Amino Acid Position:

368

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.9

38.1

Major BPS

78.8

0.71

67.6

40.6

Major PPT

68.2

0.41

0.8

60.5

35.2

Minor 5ss

43.2

-0.7

2.9

56.2

47.9

Minor BPS

47.6

-0.2

1.9

58.02

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010054

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010537

3401406 - 3431767

30362