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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34445014_34445165_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
34445014 - 34445165
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTGAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTTTTTACTC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
81.8
38.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
66.3
0.37
1.1
62.1
42.5
Minor 5ss
38.9
-1.2
2.8
43.3
43.8
Minor BPS
67
0.51
1.5
77
33.7

Associated Gene:

Gene:
HNRNPA2B1
Ensembl Gene ID:
ENSAPLG00000012019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031160
34444976 - 34455818
10843
ENSAPLT00000027851
34444529 - 34454504
9976
ENSAPLT00000022568
34444976 - 34455818
10843
ENSAPLT00000047500
34444976 - 34455818
10843
ENSAPLT00000032364
34444515 - 34455447
10933