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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34445249_34445992_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34445249 - 34445992
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGTTT
5'SS Class:
major
3'SS Sequence:
CCTGTAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TGTCCTGTAATT
Flanking Amino Acid:
SRNMGGPYGGGNYGPGGSGG
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74.1
36.8
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
73.6
0.53
0.9
66.3
38.5
Minor 5ss
48.8
-0.1
3.1
73.2
43.6
Minor BPS
57.4
0.31
2
77.88
38.9

Associated Gene:

Gene:
HNRNPA2B1
Ensembl Gene ID:
ENSAPLG00000012019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022568
34444976 - 34455818
10843
ENSAPLT00000047500
34444976 - 34455818
10843
ENSAPLT00000018694
34442856 - 34455818
12963
ENSAPLT00000032364
34444515 - 34455447
10933
ENSAPLT00000012547
34443718 - 34453610
9893
ENSAPLT00000031160
34444976 - 34455818
10843
ENSAPLT00000027851
34444529 - 34454504
9976