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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34446116_34446947_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34446116 - 34446947
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GTTAATAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTTGTGTTAATA
Flanking Amino Acid:
GYNGYGGGPGGNYGSGNYND
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
85.3
27
Major BPS
80
0.75
1
78.6
31
Major PPT
67.1
0.38
1.1
59.8
44.7
Minor 5ss
40.1
-1.1
2.7
50.2
46
Minor BPS
50.8
0.02
2.1
65.77
41.9

Associated Gene:

Gene:
HNRNPA2B1
Ensembl Gene ID:
ENSAPLG00000012019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031160
34444976 - 34455818
10843