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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34446477_34446947_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34446477 - 34446947
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTGTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATTTTAAAG
Flanking Amino Acid:
GYNGYGGGPGGGNFGGSPGY
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
85.3
27
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.3
0.46
1
64.8
41.2
Minor 5ss
40.1
-1.1
2.7
50.2
46
Minor BPS
63.9
0.3
1.5
68.85
38.6

Associated Gene:

Gene:
HNRNPA2B1
Ensembl Gene ID:
ENSAPLG00000012019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018694
34442856 - 34455818
12963
ENSAPLT00000047500
34444976 - 34455818
10843
ENSAPLT00000012547
34443718 - 34453610
9893
ENSAPLT00000032364
34444515 - 34455447
10933
ENSAPLT00000027851
34444529 - 34454504
9976
ENSAPLT00000022568
34444976 - 34455818
10843