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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34447011_34447583_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34447011 - 34447583
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGACAG
5'SS Class:
major
3'SS Sequence:
CTTCCTCCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TCTTCCTCCAAT
Flanking Amino Acid:
GPGSNFRGGADGYGSGRGFG
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
62.9
43.3
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
70.5
0.46
0.8
66.5
28.4
Minor 5ss
31.8
-2.1
3.1
40.3
45.3
Minor BPS
53.8
0.2
2.1
77.48
44.6

Associated Gene:

Gene:
HNRNPA2B1
Ensembl Gene ID:
ENSAPLG00000012019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027851
34444529 - 34454504
9976
ENSAPLT00000022568
34444976 - 34455818
10843
ENSAPLT00000018694
34442856 - 34455818
12963
ENSAPLT00000032364
34444515 - 34455447
10933
ENSAPLT00000012547
34443718 - 34453610
9893
ENSAPLT00000031160
34444976 - 34455818
10843