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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34447665_34447754_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
34447665 - 34447754
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CAACTGTTAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
ACTGCTTTAAAA
Flanking Amino Acid:
EVQNSRSGRGGNFGFGDARG
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
59.7
0.22
1
54.3
39.8
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
61.4
0.35
1.5
66.5
40.2

Associated Gene:

Gene:
HNRNPA2B1
Ensembl Gene ID:
ENSAPLG00000012019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027851
34444529 - 34454504
9976
ENSAPLT00000022568
34444976 - 34455818
10843
ENSAPLT00000018694
34442856 - 34455818
12963
ENSAPLT00000032364
34444515 - 34455447
10933
ENSAPLT00000012547
34443718 - 34453610
9893
ENSAPLT00000031160
34444976 - 34455818
10843