Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34447857_34448168_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34447857 - 34448168

Intron Length:

312

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTGAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

CTTGTGGTTACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

CGTATTTTATCT

Flanking Amino Acid:

DDHDPVDKIVLQKYHTINGH

Intron Amino Acid Position:

163

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

85.1

25.6

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

75.4

0.57

67.9

42.5

Minor 5ss

34.4

-1.8

2.9

46.9

41.8

Minor BPS

0.17

1.6

68.51

42.7

Associated Gene:

Gene:

HNRNPA2B1

Ensembl Gene ID:

ENSAPLG00000012019

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018694

34442856 - 34455818

12963

ENSAPLT00000032364

34444515 - 34455447

10933

ENSAPLT00000012547

34443718 - 34453610

9893

ENSAPLT00000031160

34444976 - 34455818

10843

ENSAPLT00000027851

34444529 - 34454504

9976

ENSAPLT00000022568

34444976 - 34455818

10843

ENSAPLT00000047500

34444976 - 34455818

10843