About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34448380_34449887_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34448380 - 34449887
Intron Length:
1508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
ATTCTTGTAACA
Flanking Amino Acid:
VEPKRAVAREESGKPGAHVT
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
74.3
0.55
1
69.7
39.8
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
54.4
0.14
2
70.42
35.8

Associated Gene:

Gene:
HNRNPA2B1
Ensembl Gene ID:
ENSAPLG00000012019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027851
34444529 - 34454504
9976
ENSAPLT00000022568
34444976 - 34455818
10843
ENSAPLT00000047500
34444976 - 34455818
10843
ENSAPLT00000018694
34442856 - 34455818
12963
ENSAPLT00000032364
34444515 - 34455447
10933
ENSAPLT00000012547
34443718 - 34453610
9893
ENSAPLT00000031160
34444976 - 34455818
10843