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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34450035_34450842_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34450035 - 34450842
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCATTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TGTGGTTTAAAC
Flanking Amino Acid:
EQWGKLTDCVVMRDPASKRS
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
78.8
0.65
0.9
77
37
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
49.9
-0
2
63.9
41.8

Associated Gene:

Gene:
HNRNPA2B1
Ensembl Gene ID:
ENSAPLG00000012019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027851
34444529 - 34454504
9976
ENSAPLT00000022568
34444976 - 34455818
10843
ENSAPLT00000047500
34444976 - 34455818
10843
ENSAPLT00000018694
34442856 - 34455818
12963
ENSAPLT00000032364
34444515 - 34455447
10933
ENSAPLT00000012547
34443718 - 34453610
9893
ENSAPLT00000031160
34444976 - 34455818
10843