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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34450954_34454492_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34450954 - 34454492
Intron Length:
3539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTGGG
5'SS Class:
major
3'SS Sequence:
TTCTCTGTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ATCACATTAACG
Flanking Amino Acid:
MKNMREKEQFRKLF
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
59.9
44.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
70.8
0.47
1
68.3
37.5
Minor 5ss
31.2
-2.2
3.3
37.4
42.4
Minor BPS
59.7
0.17
1.8
64.06
43.3

Associated Gene:

Gene:
HNRNPA2B1
Ensembl Gene ID:
ENSAPLG00000012019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027851
34444529 - 34454504
9976