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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34450954_34455417_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34450954 - 34455417
Intron Length:
4464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
TTCTCTGTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ATCACATTAACG
Flanking Amino Acid:
MPRGDRESDWREKEQFRKLF
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
63.9
42.4
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
70.8
0.47
1
68.3
37.5
Minor 5ss
26.7
-2.7
2.9
25.7
36.9
Minor BPS
59.7
0.17
1.8
64.06
43.3

Associated Gene:

Gene:
HNRNPA2B1
Ensembl Gene ID:
ENSAPLG00000012019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032364
34444515 - 34455447
10933