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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34453611_34455417_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34453611 - 34455417
Intron Length:
1807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
GTCAATTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGATGGTCAATT
Flanking Amino Acid:
RCLAATGRATGKGFTFCSPV
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
63.9
42.4
Major BPS
79
0.72
1
69
38.9
Major PPT
75.9
0.58
1
68.9
41.5
Minor 5ss
26.7
-2.7
2.9
25.7
36.9
Minor BPS
44.1
-0.3
2.5
65.74
44.9

Associated Gene:

Gene:
HNRNPA2B1
Ensembl Gene ID:
ENSAPLG00000012019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022568
34444976 - 34455818
10843
ENSAPLT00000018694
34442856 - 34455818
12963
ENSAPLT00000047500
34444976 - 34455818
10843
ENSAPLT00000031160
34444976 - 34455818
10843