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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34457206_34461084_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34457206 - 34461084
Intron Length:
3879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
GCAATCTGAATT
Flanking Amino Acid:
MASNKTTLHKMGKKQNGK
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
29.6
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
85.6
0.8
0.7
81.6
29.6
Minor 5ss
40.6
-1
2.7
47.5
42.3
Minor BPS
51.7
0.13
1.5
62.96
41.1

Associated Gene:

Gene:
CBX3
Ensembl Gene ID:
ENSAPLG00000011969
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012470
34457155 - 34465451
8297