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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3447977_3462675_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3447977 - 3462675
Intron Length:
14699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTATTACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
AGTTCTTTCACT
Flanking Amino Acid:
ERKEKHGIYHRRLARSTLLL
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
71.8
0.49
1
67
37.9
Minor 5ss
38
-1.4
3.1
50.1
46.4
Minor BPS
68.1
0.65
1.7
82.97
38.2

Associated Gene:

Gene:
ADCYAP1R1
Ensembl Gene ID:
ENSAPLG00000009120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032738
3445732 - 3581832
136101