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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3447977_3468112_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3447977 - 3468112
Intron Length:
20136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TCTATTACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
AGTTCTTTCACT
Flanking Amino Acid:
DIGGNESSIYLRLARSTLLL
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
71.8
0.49
1
67
37.9
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
68.1
0.65
1.7
82.97
38.2

Associated Gene:

Gene:
ADCYAP1R1
Ensembl Gene ID:
ENSAPLG00000009120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009591
3445732 - 3581832
136101