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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3453140_3455932_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3453140 - 3455932
Intron Length:
2793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGACTC
5'SS Class:
major
3'SS Sequence:
TTGTCATATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATATGCTGAAAA
Flanking Amino Acid:
CSCSPCTGHMRSCVQKCYCK
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
66.3
39.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
72.8
0.51
0.9
71.3
38.9
Minor 5ss
31.6
-2.1
3.2
43.6
43.6
Minor BPS
50.1
-0
2
65.36
40.3

Associated Gene:

Gene:
ADCYAP1R1
Ensembl Gene ID:
ENSAPLG00000009120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041706
3445732 - 3581832
136101