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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3455987_3468112_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3455987 - 3468112
Intron Length:
12126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CCTTCCACCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
GAATGTTTAACT
Flanking Amino Acid:
DIGGNESSIYFTLPLPSRCS
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
67.4
0.39
0.8
59
31.4
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
62.1
0.46
1.8
74.84
41.6

Associated Gene:

Gene:
ADCYAP1R1
Ensembl Gene ID:
ENSAPLG00000009120
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041706
3445732 - 3581832
136101