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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34631272_34644918_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34631272 - 34644918
Intron Length:
13647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
TTCTTCCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTATAT
U12 Branch Point Sequence:
TGGTGTATATTT
Flanking Amino Acid:
RRNPADLSEIGIQDLEKERE
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.7
43.7
Major BPS
64.1
0.35
1.2
61
45.5
Major PPT
83.3
0.75
0.6
82
22.8
Minor 5ss
44.2
-0.6
3.2
64.5
46.9
Minor BPS
43
-0.4
2.1
60.92
43.5

Associated Gene:

Gene:
SKAP2
Ensembl Gene ID:
ENSAPLG00000020344
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032284
34630380 - 34710055
79676