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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34637981_34644918_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34637981 - 34644918
Intron Length:
6938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGCTGT
5'SS Class:
major
3'SS Sequence:
ATTTCCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCTTCATCT
Flanking Amino Acid:
RRNPADLSEIAFLTSAIHSK
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.7
43.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.5
0.75
0.8
74.4
35.8
Minor 5ss
44.2
-0.6
3.2
64.5
46.9
Minor BPS
61
0.42
1.8
81.15
40.5

Associated Gene:

Gene:
SKAP2
Ensembl Gene ID:
ENSAPLG00000020344
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030623
34636238 - 34710055
73818