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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34645073_34649985_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34645073 - 34649985
Intron Length:
4913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TAACACTTAATT
Flanking Amino Acid:
SPPNPAEVLKRREPYCTIKV
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
65.7
0.35
1
61.3
38.1
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
65.6
0.57
1.5
77.21
38.5

Associated Gene:

Gene:
SKAP2
Ensembl Gene ID:
ENSAPLG00000020344
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032284
34630380 - 34710055
79676
ENSAPLT00000030623
34636238 - 34710055
73818