About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34673043_34683086_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34673043 - 34683086
Intron Length:
10044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCAT
5'SS Class:
major
3'SS Sequence:
TTTCCCTAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTTTCCCTAATC
Flanking Amino Acid:
RGDVIYILSKAKSALEIKSG
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
63.1
42.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
75.1
0.57
0.9
75.1
33.5
Minor 5ss
30.7
-2.2
3.6
46.8
48.5
Minor BPS
70.2
0.61
1.7
78.96
36.7

Associated Gene:

Gene:
SKAP2
Ensembl Gene ID:
ENSAPLG00000020344
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042766
34671911 - 34719566
47656