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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_34673574_34683086_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34673574 - 34683086
Intron Length:
9513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCAT
5'SS Class:
major
3'SS Sequence:
TGTTTTCAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGTTTTCAATT
Flanking Amino Acid:
RGDVIYILSKEYNRFGWWVG
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
63.1
42.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71.3
0.48
1
72.1
38.2
Minor 5ss
30.7
-2.2
3.6
46.8
48.5
Minor BPS
64.6
0.54
1.5
79.17
37.8

Associated Gene:

Gene:
SKAP2
Ensembl Gene ID:
ENSAPLG00000020344
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012135
34672043 - 34748485
76443